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My Publications

 

1.       Cassie Reicks, Jordan Groathouse, Mitch Trauernicht, Sharmin Sikich, Mark V. Wilson, Andrea E. Holmes and Abby J. Jackson. Wild Plum: novel blue fluorescent compounds capable of luminosity restoration in sun-exposed skin. Skin and technology. Volume 19, Issue 1, pages e465–e472, 2013.

2.       A. Smith, M. V. Wilson, M. Trauernicht, A. E. Holmes, Abby Jackson. Improved image analysis of DETECHIP allows for increased specificity in drug discrimination. Journal of Forensic Research, 3, 161, 2012.

3.       Marcus Lyon,1 Mark V. Wilson,1 Kerry A. Rouhier,2  David J. Symonsbergen,3  Kiran Bastola,4 Ishwor Thapa,4 Andrea E. Holmes,1 Sharmin M. Sikich,*1 and Abby Jackson.*1 Digital Image Analysis for Code Analysis. Signal and Image Processing: An international Journal. Volume 3, No. 4,51-63, 2012.

4.       Marcus Lyon, Mark V Wilson, Kerry A Rouhier, David J Symonsbergen, Dhundy Kiran Bastola, Ishwor Thapa, Andrea E Holmes, Sharmin M Sikich and Abby Jackson. “IMAGE ANALYSIS OF DETECHIP® - A MOLECULAR SENSING ARRAY” in Advances in Intelligent and Soft Computing, book series, published by Springer, 166, 145-158, 2012.

5.       Andrea E. Holmes, Jung Kyu Choi, Jacob Francis, Alessandro D'Urso, Milan Balaz* "Sulfonated Ni(II)porphyrin improves the detection of Z-DNA in condensed and non-condensed BZB DNA sequences." Journal of Inorganic Biochemistry, 110:18-20, 2012.

6.       Choi, J.K., Holmes, Andrea E., Trauernicht, M., Balaz, Milan*. 3,3'-Diethylthiatricarbocyanine iodide: a highly sensitive chiroptical reporter of DNA helicity and sequence. Int. J. Mol. Sci. 12, 8052-8062 (2011).

7.       Choi, J.K.; Sargsyan, G.; Shabbir-Hussain, M.; Holmes, A.E.; Balaz, M. Chiroptical detection of condensed Nickel(II)-Z-DNA in the presence of the B-DNA via porphyrin exciton coupled circular dichroism. J. Phys. Chem. B 2011, 115, 10182–10188.

8.       D’Urso, A.; Holmes, A.E.; Berova, N.; Balaz, M.; Purrello, R. Z-DNA recognition in B-Z-B sequences by a cationic zinc porphyrin. Chem. Asian J. 2011, 6, 3104–3109.

9.       Faraldos, J.A.; Giner, J-L.; Smith, D.; Wilson, M.; Ronhovde, K.; Wilson, E.; Clevette, D.; Holmes, A.; Rouhier, K. “Enzymatic Resolution of 1-Phenylethanol and Formation a Diastereomer: An Undergraduate 1H NMR Experiment to Introduce Chiral Chemistry” J. Chem. Educ. (2011) 88(3): 334-336.

10.   Lyon, M; Groathouse, J.; Beaber, J.; Turner, L; Rouhier, K.; Wilson, M.; Symonsbergen, D.; Sikich, S.; Holmes, A.* DETECHIP 1.2®: An improved molecular sensing array” J. Forensic Research., 2:126. doi:10.4172/2157-7145.1000126.

11.   US Patent 2010, U.S. Patent No. 7,705,144: “Dyes of improved optical brightness and/or fluorescence and compositions containing them”. Inventor: Andrea E. Holmes, Ph.D.*

12.   Jordan Groathouse, Homar Barcena, Casey Gustafson, Mark V. Wilson, David J. Symonsbergen, Kerry A. Lucas and Andrea E. Holmes* Wild Plum: Dyes of Improved Optical Brightness and Fluorescence. Journal of Cosmetic Science, 61, 279-288, 2010.

13.   Burks, R; Pacquette, S.; Guericke, M.; Wilson, M.; Symonsbergen, D.; Lucas, K.; Holmes, A.* DETECHIP®: A sensor for drugs of abuse” J. Forensic Sci., 55, 3, 723-727, 2010.

14.   Anderson, M.; Wilcox, K.; Guericke, M.; Chu, H.; Wilson, M.; Wilson, E.; Lucas, K.; Holmes, A.* “Enantio-discrimination of methamphetamine by circular dichroism using porphyrin tweezers” in print, Chirality  22, 398-402, 2010.

15.   D’Urso, A.; Mammana, A.; Balaz, M.; Holmes, A.; Berova, N.; Lauceri, R.; Purrello, R. Interactions of a Tetraanionic Porphyrin with DNA: from a Z-DNA Sensor to a Versatile Supramolecular Device” J. Am. Chem. Soc., 2009, 131 (6), pp 2046–2047.

16.   Das,D.; Dai, Z.; Holmes, A.; Canary, J. Exploring the Scope of Redox-Triggered Chiroptical Switches: Syntheses, X-ray Structures, and Circular Dichroism of Cobalt and Nickel Complexes of N,N-Bis(arylmethyl)methionine Derivatives. Chirality 20:585–591, 2008.

17.   Chen, Y.; Parr, T.; Holmes, A.; Nakanishi, K.  Porphyrinmaleimides: Towards Thiol Probes for Cysteine Residues in Proteins. Bioconjugate Chemistry, 19 (1), 5–9, 2008.

18.   US Patent Application 2008, U.S. Serial No. 12/503,260: “DETECHIP MOLECULAR COLOR AND FLUORESCENT SENSOR ARRAYS FOR ABUSED NARCOTICS AND OTHER SUBSTANCES”. Inventor: Andrea E. Holmes, Ph.D.*

19.   Holmes, A.E.; Das, D.; Canary, J.W. Chelation enhanced Circular Dichroism of Tripodal Bisporphyrin Ligands. J. Am. Chem. Soc., 129 (6), 1506-1507, 2007.

20.   Matsuda, H.; Zhang, S.; Holmes, A.E.; Krane, S.; Nakanishi, K.; Nesnas, N. Synthesis of 11-cis-locked-biotinylated retinoid for sequestering 11-cis retinoid binding proteins. Can. J. Chem., 84, 1363-1370, 2006.

21.   Balaz, M.; De Napoli, M.; Holmes, A.E.; Mammana, A.; Nakanishi, K.; Berova, N.; Purello, R. A Cationic Zinc Porphyrin as a Chiroptical Sensor for Z-DNA. Angew. Chem. Int. Ed., 44, 4006-4009, 2005.

22.   Balaz, M.; Holmes, A.E.; Benedetti, M.; Rodriguez, P.C.; Berova, N.; Nakanishi, K.; Proni, G. Synthesis and Circular Dichroism of Tetraarylporphyrin-Oligonucleotide Conjugates. J. Am. Chem. Soc., 127 (12), 471-473, 2005.

23.   Balaz, M.;  Holmes, A.E.; Benedetti, M.; Proni, G.; Berova, N. Porphyrin substituted phosphoramidites: new building blocks for porphyrin-oligonucleotide syntheses. Biorg. Med. Chem., 13 (7), 2413-2421, 2005.

24.   Holmes, A.E.; Simpson, S.A.; Canary, J.W. Stereodynamic Coordination Complexes: Dependence of Exciton-Coupled Circular Dichroism Spectra Molecular Conformation and Shape. Monatshefte, 136 (3), 461-475, 2005.

25.   Holmes, A.E. Book review: “Introduction to Supramolecular Chemistry” by Helena Dodziuk. 350 pp., Chirality, 17, 169-170, 2005. Holmes, A.E.; Barcena, H.; Zahn, S.; Canary, J.  Supramolecular Chiral Inversion. Adv. Supramol. Chem., 8, 43-78, 2002.